seqrecord_expanded 0.2.10

用法

默认情况下，它假定dna序列具有不明确的字符。

>>>fromseqrecord_expandedimportSeqRecordExpanded>>>seq_record=SeqRecordExpanded('TCTGAATGGAAGACAAAGCGTCCA',...voucher_code='CP100-09',...taxonomy={'genus':'Melitaea',...'species':'phoebe',...},...gene_code='EF1a',...reading_frame=1,...table=1,# translation table...)>>># Degenerate sequence standard genetic code>>>seq_record.degenerate()'TCNGARTGGAARACNAARMGNCCN'>>>>>># Degenerate sequence S method>>>seq_record.degenerate(method='S')'AGYGARTGGAARACNAARMGNCCN'>>>>>># Degenerate sequence Z method>>>seq_record.degenerate(method='Z')'TCNGARTGGAARACNAARMGNCCN'>>>>>># Degenerate sequence SZ method>>>seq_record.degenerate(method='SZ')'NNNGARTGGAARACNAARMGNCCN'>>>>>># get first codon positions>>>seq_record.first_codon_position()'TGTAAACC'>>>>>># get second codon positions>>>seq_record.second_codon_position()'CAGACAGC'>>>>>># get third codon positions>>>seq_record.third_codon_position()'TAGGAGTA'>>>>>># get first and second positions>>>seq_record.first_and_second_positions()'TCGATGAAACAACGCC'>>>>>># translate to aminoacid sequence>>>seq_record.translate()'SEWKTKRP'>>># translate to aminoacid sequence>>>seq_record.translate(table=1)'SEWKTKRP'

安装

pip install seqrecord-expanded

pip install -r requirements.txt

兼容性

支持的python版本：2.6、2.7、3.3、3.4、3.5、pypy。

许可证

疯牛病。

作者

seqrecord expanded由Carlos Peña编写。