pytaxize 0.7.0

化脓

这是R包taxize的一个端口。在这个库的R版本中有很多事情要做，所以在这里获得所有相同的功能需要一段时间。在

为什么？Python版本的taxize的一个显著优势将是对于那些内心深处是pythonists的人。你也可以在Taxing应用程序中引用

python 2/3

pytaxize只在python3中开发和测试

安装

pypi稳定

pip install pytaxize

开发版本

分类ID

我已经开始为分类ID开发一个类接口，它将有一堆扩展方法来处理taxon id的各种事情。现在可以得到的只是COL id。在

frompytaxizeimportIdsres=Ids('Poa annua')res.ncbi()res.ids

{'Poa annua':[{'id':'93036','name':'Poa annua','rank':'species','uri':'https://www.ncbi.nlm.nih.gov/taxonomy/93036'}]}

Vascan搜索

importpytaxizepytaxize.vascan_search(q=["Helianthus annuus"])

{u'apiVersion':u'0.1',u'results':[{u'matches':[{u'canonicalName':u'Helianthus annuus',u'distribution':[{u'establishmentMeans':u'introduced',u'locality':u'NS',u'locationID':u'ISO 3166-2:CA-NS',u'occurrenceStatus':u'introduced'},{u'establishmentMeans':u'',u'locality':u'PE',u'locationID':u'ISO 3166-2:CA-PE',u'occurrenceStatus':u'excluded'},{u'establishmentMeans':u'',u'locality':u'NT',u'locationID':u'ISO 3166-2:CA-NT',u'occurrenceStatus':u'doubtful'},{u'establishmentMeans':u'introduced',

刮取分类名称

out=pytaxize.scrapenames(url='http://www.mapress.com/zootaxa/2012/f/z03372p265f.pdf')out['data'][0:3]

[{'verbatim':'(Hemiptera:','scientificName':'Hemiptera','offsetStart':222,'offsetEnd':233},{'verbatim':'Sternorrhyncha:','scientificName':'Sternorrhyncha','offsetStart':234,'offsetEnd':249},{'verbatim':'Coccoidea:','scientificName':'Coccoidea','offsetStart':250,'offsetEnd':260}]

ITIS低级功能

frompytaxizeimportitisitis.accepted_names(504239){'acceptedName':'Dasiphora fruticosa','acceptedTsn':'836659','author':'(L.) Rydb.'}

itis.comment_detail(tsn=180543)[{'commentDetail':'Status: CITES - Appendix I as U. arctos (Mexico, Bhutan, China, and Mongolia populations) and U. a. isabellinus; otherwise Appendix II. U. S. ESA - Endangered as U. arctos pruinosus, as U. arctos in Mexico, and as U. a. arctos in Italy. Threatened as U. a. ho...','commentId':'18556','commentTimeStamp':'2007-08-20 15:06:38.0','commentator':'Wilson & Reeder, eds. (2005)','updateDate':'2014-02-03'},{'commentDetail':"Comments: Reviewed by Erdbrink (1953), Couturier (1954), Rausch (1963a), Kurtén (1973), Hall (1984) and Pasitschniak-Arts (1993). Ognev (1931) and Allen (1938) recognized U. pruinosus as distinct; not followed by Ellerman and Morrison-Scott (1951), Gao (1987), and Stroganov (1962). Lönnberg (1923b) believed that differences between pruinosus and arctos warranted subgeneric distinction as (Mylarctos) pruinosus; however, this was not supported by Pocock's (1932b) thorough revision. Synonyms allocated a...",'commentId':'18557','commentTimeStamp':'2007-08-20 15:06:38.0','commentator':'Wilson & Reeder, eds. (2005)','updateDate':'2014-02-03'}]

itis.hierarchy_up(tsn=36485){'author':'Raf.','parentName':'Asteraceae','parentTsn':'35420','rankName':'Genus','taxonName':'Agoseris','tsn':'36485'}

生命目录

frompytaxizeimportcolx=col.children(name=["Apis"])x[0][0:3]

[{'id':'7a4a38c5095963949d6d6ec917d471de','name':'Apis andreniformis','rank':'Species'},{'id':'39610a4ceff7e5244e334a3fbc5e47e5','name':'Apis cerana','rank':'Species'},{'id':'e1d4cbf3872c6c310b7a1c17ddd00ebc','name':'Apis dorsata','rank':'Species'}]

解析名称

使用GBIF的解析器API解析名称

frompytaxizeimportgbifgbif.parse(name=['Arrhenatherum elatius var. elatius','Secale cereale subsp. cereale','Secale cereale ssp. cereale','Vanessa atalanta (Linnaeus, 1758)'])

[{'scientificName':'Arrhenatherum elatius var. elatius','type':'SCIENTIFIC','genusOrAbove':'Arrhenatherum','specificEpithet':'elatius','infraSpecificEpithet':'elatius','parsed':True,'parsedPartially':False,'canonicalName':'Arrhenatherum elatius elatius','canonicalNameWithMarker':'Arrhenatherum elatius var. elatius','canonicalNameComplete':'Arrhenatherum elatius var. elatius','rankMarker':'var.'},{'scientificName':'Secale cereale subsp. cereale','type':'SCIENTIFIC',...

贡献者

• Scott Chamberlain
• Colin Talbert
• akshayah3
• panks
• Yanghao Li
• Ben Morris
• Bishakh Ghosh
• Yoav Ram

元

• 请注意，这个项目是用Contributor Code of Conduct发布的。通过参与这个项目，你同意遵守它的条款。在
• 许可证：MIT；见LICENSE file

变更日志

• 首次发布到pypi