穿过。焦油.gz目录和连接文件（不解压缩文件夹）

Question

我有一个大约20000的文件夹焦油.gz目录，每个目录包含一堆文件。我想进入源文件夹，遍历焦油.gz目录（不解压缩）并连接文件，这样在最后我将有三个大文件。你知道吗

例如，我有一个根文件夹pnoc，其中有.tar.gz目录，每个压缩文件夹有三个文件夹Kallisto、RSEM和Hugo。我解压缩了一个这样的目录，如下所示：

pnoc/
├── C021_0001_20140916_tumor_RNASeq.tar.gz
├── C021_0002_001113_tumor_RNASeq.tar.gz
├── C021_0003_001409_tumor_RNASeq.tar.gz
├── C021_0004_001418_tumor_RNASeq.tar.gz
├── C021_0005_001661_tumor_RNASeq.tar.gz
├── C021_0007_001669_tumor_RNASeq.tar.gz
├── C021_0008_001699_tumor_RNASeq.tar.gz
├── C021_0009_001766_tumor_RNASeq.tar.gz
├── C021_0010_001774_tumor_RNASeq.tar.gz
├── C021_0011_001786_tumor_RNASeq.tar.gz
├── C021_0012_001825_tumor_RNASeq.tar.gz
├── C021_0013_001872_tumor_RNASeq.tar.gz
├── CPBT_0001_1_tumor_RNASeq.tar.gz
├── CPBT_0003_1_tumor_RNASeq.tar.gz
├── CPBT_0004_1_tumor_RNASeq.tar.gz
├── CPBT_0005_1_tumor_RNASeq.tar.gz
├── CPBT_0006_1_tumor_RNASeq.tar.gz
├── CPBT_0007_1_tumor_RNASeq.tar.gz
├── CPBT_0008_1_tumor_RNASeq.tar.gz
├── CPBT_0009_1_tumor_RNASeq.tar.gz
├── IMPROPERLY_PAIRED.C021_0006_001666_tumor_RNASeq.tar.gz
└── pnoc-manifest


C021_0001_20140916_tumor_RNASeq
├── Kallisto
│   ├── C021_0001_20140916_tumor_RNASeq.abundance.h5
│   ├── C021_0001_20140916_tumor_RNASeq.abundance.tsv
│   └── C021_0001_20140916_tumor_RNASeq.run_info.json
└── RSEM
    ├── C021_0001_20140916_tumor_RNASeq.rsem.genes.norm_counts.tab
    ├── C021_0001_20140916_tumor_RNASeq.rsem.genes.raw_counts.tab
    ├── C021_0001_20140916_tumor_RNASeq.rsem.isoform.norm_counts.tab
    ├── C021_0001_20140916_tumor_RNASeq.rsem.isoform.raw_counts.tab
    ├── C021_0001_20140916_tumor_RNASeq.rsem_genes.results
    ├── C021_0001_20140916_tumor_RNASeq.rsem_isoforms.results
    └── Hugo
        ├── C021_0001_20140916_tumor_RNASeq.rsem.genes.norm_counts.hugo.tab
        ├── C021_0001_20140916_tumor_RNASeq.rsem.genes.raw_counts.hugo.tab
        ├── C021_0001_20140916_tumor_RNASeq.rsem.isoform.norm_counts.hugo.tab
        ├── C021_0001_20140916_tumor_RNASeq.rsem.isoform.raw_counts.hugo.tab
        ├── C021_0001_20140916_tumor_RNASeq.rsem_genes.hugo.results
        └── C021_0001_20140916_tumor_RNASeq.rsem_isoforms.hugo.results

所以我想连接所有的*。丰度.tsv在一个，*。rsem.genes.norm\u计数秒中的.tab和*.rsem_genes.hugo.结果在第三个文件中。最有效的方法是什么？我什么都可以-R、Python或Bash。你知道吗

$ find --version
find (GNU findutils) 4.5.11
Copyright (C) 2012 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>.
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

Written by Eric B. Decker, James Youngman, and Kevin Dalley.
Features enabled: D_TYPE O_NOFOLLOW(enabled) LEAF_OPTIMISATION SELINUX FTS(FTS_CWDFD) CBO(level=2) 

谢谢！你知道吗

Answer 1

使用如下bashfind命令；exec中的cat命令应用于该命令返回的所有文件。+选项用于确保shell生成的cat实例不超过一个。你知道吗

这里{}表示find命令返回的文件。有关^{}的详细信息，请参阅

find . -type f -name '*.abundance.tsv' -exec cat "{}" + >> ../AbundanceTSV.tsv
find . -type f -name '*.rsem.genes.norm_counts.tab' -exec cat "{}" + >> ../GenesNormCounts.tab
find . -type f -name '*.rsem_genes.hugo.results' -exec cat "{}" + >> ../HugoResults.results