我正在试着运行checkm,但我一直收到这个错误“
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
一开始我会出错,因为我在python3上运行checkm,它与python2兼容。所以我下载了miniconda2并运行checkm。但现在我得到了一个不同的错误
module load engaging/python/2.7.12
mkdir -p $ASS_DIR/maxbin/checkm
/home/ddumit/miniconda2/envs/py27/bin/checkm lineage_wf -x fasta $ASS_DIR/maxbin $ASS_DIR/maxbin/checkm
/home/ddumit/miniconda2/envs/py27/bin/checkm qa $ASS_DIR/maxbin/checkm/lineage.ms $ASS_DIR/maxbin/checkm > $ASS_DIR/maxbin/checkm/summary.txt
/home/ddumit/miniconda2/envs/py27/bin/checkm tree_qa $ASS_DIR/maxbin/checkm > $ASS_DIR/maxbin/checkm/phylo_summary.txt
这是我得到的结果:
Traceback (most recent call last):
File "/home/ddumit/miniconda2/envs/py27/bin/checkm", line 36, in <module>
from checkm import main
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/main.py", line 28, in <module>
from checkm.resultsParser import ResultsParser
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/resultsParser.py", line 34, in <module>
from checkm.coverage import Coverage
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/coverage.py", line 30, in <module>
import pysam
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import *
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
Traceback (most recent call last):
File "/home/ddumit/miniconda2/envs/py27/bin/checkm", line 36, in <module>
from checkm import main
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/main.py", line 28, in <module>
from checkm.resultsParser import ResultsParser
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/resultsParser.py", line 34, in <module>
from checkm.coverage import Coverage
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/coverage.py", line 30, in <module>
import pysam
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import *
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
Traceback (most recent call last):
File "/home/ddumit/miniconda2/envs/py27/bin/checkm", line 36, in <module>
from checkm import main
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/main.py", line 28, in <module>
from checkm.resultsParser import ResultsParser
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/resultsParser.py", line 34, in <module>
from checkm.coverage import Coverage
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/checkm/coverage.py", line 30, in <module>
import pysam
File "/home/ddumit/miniconda2/envs/py27/lib/python2.7/site-packages/pysam/__init__.py", line 5, in <module>
from pysam.libchtslib import *
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory
目前没有回答
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