基于Anaconda2 for pySCA教程的StructureBuilder(Biopython)中的一个错误,为什么蛋白质链是不连续的?

2024-09-19 07:01:48 发布

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我按照pySCA的教程运行了S1A丝氨酸蛋白酶的计算 (python中的统计耦合分析Link)。在

但是,StructureBuilder(基于Anaconda2的Biopython)出了问题。在

“警告:链%s不连续…”

怎么能修好?在

如果你们中的一些人能指出这一点,我将非常感激。在

错误输出:

Mingling@Mingling-PC MINGW32 ~/Desktop/pySCA
$ ./runAllNBCalcs_2.sh
C:\Users\Mingling\Anaconda2\lib\site-packages\Bio\PDB\StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 2569.
PDBConstructionWarning)
C:\Users\Mingling\Anaconda2\lib\site-packages\Bio\PDB\StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 2570.
PDBConstructionWarning)
C:\Users\Mingling\Anaconda2\lib\site-packages\Bio\PDB\StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain E is discontinuous at line 2580.
PDBConstructionWarning)
C:\Users\Mingling\Anaconda2\lib\site-packages\Bio\PDB\StructureBuilder.py:89: PDBConstructionWarning: WARNING: Chain I is discontinuous at line 2758.
PDBConstructionWarning)
Error!!! Something wrong with PDB id or path.

Tags: pychainislibpackagessiteuserspdb