<p>您忘记在init<code>__init__</code>结束时运行<a href="https://docs.python.org/dev/library/argparse.html#the-parse-args-method" rel="nofollow">^{<cd1>}</a></p>
<pre><code>class argument_parser(object):
# call on all our file type parsers in the sequence_anlysis_method
def __init__(self):
self.db_directory = os.path.dirname(os.path.abspath(sys.argv[0]))
"""A customized argument parser that does a LOT of error checking"""
self.parser = argparse.ArgumentParser(
prog="igblast")
general = self.parser.add_argument_group(
title="\nGeneral Settings")
general.add_argument(
"-x", ' executable',
default="/usr/bin/igblastn",
type=self._check_if_executable_exists,
help="The location of the executable, default is /usr/bin/igblastn")
""" >>>>>>>>>>>>> add this line <<<<<<<<<<< """
self.parser.parse_args()
def _check_if_executable_exists(self,x_path):
if not os.path.exists(x_path):
msg = "path to executable {0} does not exist, use -h for help\n".format(x_path)
raise argparse.ArgumentTypeError(msg)
if not os.access(x_path, os.R_OK):
msg1 = "executable {0} does have not permission to run\n".format(x_path)
raise argparse.ArgumentTypeError(msg1)
else:
return x_path
if __name__ == '__main__':
argument_class = argument_parser()
</code></pre>