我正试图使用XRDTools
库将panalyticxrdml文件转换成更适合数据库的格式,比如pandas数据帧。在
XRDTools库描述如下:https://github.com/paruch-group/xrdtools。它将XRDML文件导入Python字典。我对LXML完全陌生,如果这是一个简单的问题,我很抱歉。在
我使用Anaconda创建了python2.7和3.6环境,专门用于使用XRDTools包。我想用python3.6运行它。在
在Python2.7中,此代码运行平稳:
import xrdtools
xrd = xrdtools.read_xrdml('filename.xrdml')
输出是dict
:
然后我可以像使用其他Python对象一样使用字典。在
在Python3.6中,同样的代码会生成以下错误消息:
Traceback (most recent call last):
File "...\AppData\Local\Continuum\Anaconda2\envs\py36xrd\lib\site-packages\IPython\core\interactiveshell.py", line 2910, in run_code
exec(code_obj, self.user_global_ns, self.user_ns)
File "<ipython-input-3-b6f5409b8bf9>", line 1, in <module>
xrd = xrdtools.read_xrdml('filename.xrdml')
File "...\XRDTools\xrdtools\xrdtools\io.py", line 297, in read_xrdml
valid = validate_xrdml_schema(filename)
File ...\XRDTools\xrdtools\xrdtools\io.py", line 43, in validate_xrdml_schema
xmlschema_doc = etree.parse(f)
File "src\lxml\etree.pyx", line 3444, in lxml.etree.parse (src\lxml\etree.c:83171)
File "src\lxml\parser.pxi", line 1855, in lxml.etree._parseDocument (src\lxml\etree.c:121011)
File "src\lxml\parser.pxi", line 1875, in lxml.etree._parseFilelikeDocument (src\lxml\etree.c:121294)
File "src\lxml\parser.pxi", line 1770, in lxml.etree._parseDocFromFilelike (src\lxml\etree.c:120078)
File "src\lxml\parser.pxi", line 1185, in lxml.etree._BaseParser._parseDocFromFilelike (src\lxml\etree.c:114806)
File "src\lxml\parser.pxi", line 598, in lxml.etree._ParserContext._handleParseResultDoc (src\lxml\etree.c:107724)
File "src\lxml\parser.pxi", line 709, in lxml.etree._handleParseResult (src\lxml\etree.c:109433)
File "src\lxml\parser.pxi", line 638, in lxml.etree._raiseParseError (src\lxml\etree.c:108287)
File "...\XRDTools\xrdtools\xrdtools\data\schemas\XRDMeasurement15.xsd", line 1
<?xml version="1.0" encoding="UTF-8"?>
^
XMLSyntaxError: Start tag expected, '<' not found, line 1, column 1
{cd3>正在挖掘这个函数:
def validate_xrdml_schema(filename):
"""Validate the xml schema of a given file.
Parameters
----------
filename : str
The Filename of the `.xrdml` file to test.
Returns
-------
float or None
Returns the version number as float or None if
the file was not matching any provided xml schema.
"""
schemas = [(1.5, 'data/schemas/XRDMeasurement15.xsd'),
(1.4, 'data/schemas/XRDMeasurement14.xsd'),
(1.3, 'data/schemas/XRDMeasurement13.xsd'),
(1.2, 'data/schemas/XRDMeasurement12.xsd'),
(1.1, 'data/schemas/XRDMeasurement11.xsd'),
(1.0, 'data/schemas/XRDMeasurement10.xsd'),
]
schemas = [(v, os.path.join(package_path, schema)) for v, schema in schemas]
with open(filename, 'r') as f:
data_xml = etree.parse(f)
for version, schema in schemas:
with open(schema, 'r') as f:
xmlschema_doc = etree.parse(f)
xmlschema = etree.XMLSchema(xmlschema_doc)
valid = xmlschema.validate(data_xml)
if valid:
return version
return None
据我所知,xmlschema_doc = etree.parse(f)
是问题的根源。如果我将这行改为etree.parse(filename)
,它将运行而不会出错,但我不确定这是否重要。除了Jupyter笔记本中的一个独立的小单元之外,我还无法将该修复应用于其他任何东西。在
是什么导致了错误?有没有一种方法可以修复python3的问题?实现该修复的最佳方法是什么?在
希望能解决这个问题。蒂娅!在
我能找到的最相关的问题是: Python 3.4 lxml.etree: Start tag expected, '<' not found, line 1, column 1
尝试:
(
io.open
,因为它对python2和python3都是相同的调用)。在相关问题 更多 >
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