在CentOS上安装Networkit时出错

[JohnRambo@Machine ~]$ g++ --version g++ (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5) Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. [JohnRambo@Machine ~]$ clang++ --version clang version 3.4.2 (tags/RELEASE_34/dot2-final) Target: x86_64-redhat-linux-gnu Thread model: posix [JohnRambo@Machine ~]$ python -V Python 2.7.5 [JohnRambo@Machine ~]$ which python /usr/bin/python [JohnRambo@Machine ~]$ python3 -V Python 3.6.8 [JohnRambo@Machine ~]$ which python3 /usr/bin/python3 [JohnRambo@Machine ~]$ pip --version pip 8.1.2 from /usr/lib/python2.7/site-packages (python 2.7) [JohnRambo@Machine ~]$ which pip /usr/bin/pip [JohnRambo@Machine ~]$ pip3 --version WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip. Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue. To avoid this problem you can invoke Python with '-m pip' instead of running pip directly. pip 21.2.1 from /home/JohnRambo/.local/lib/python3.6/site-packages/pip (python 3.6) [JohnRambo@Machine ~]$ which pip3 /usr/bin/pip3 [JohnRambo@Machine ~]$ cmake --version cmake version 2.8.12.2 [JohnRambo@Machine ~]$ cython --version Cython version 0.19 [JohnRambo@Machine ~]$ ls -ls /usr/bin/python* 0 lrwxrwxrwx. 1 root root 7 Jul 22 09:56 /usr/bin/python -> python2 0 lrwxrwxrwx. 1 root root 9 Jul 22 09:56 /usr/bin/python2 -> python2.7 8 -rwxr-xr-x. 1 root root 7144 Nov 16 2020 /usr/bin/python2.7 0 lrwxrwxrwx. 1 root root 9 Jul 22 10:14 /usr/bin/python3 -> python3.6 12 -rwxr-xr-x. 2 root root 11328 Nov 16 2020 /usr/bin/python3.6 0 lrwxrwxrwx. 1 root root 17 Jul 22 10:15 /usr/bin/python3.6-config -> python3.6m-config 12 -rwxr-xr-x. 2 root root 11328 Nov 16 2020 /usr/bin/python3.6m 4 -rwxr-xr-x. 1 root root 173 Nov 16 2020 /usr/bin/python3.6m-config 4 -rwxr-xr-x. 1 root root 3403 Nov 16 2020 /usr/bin/python3.6m-x86_64-config 0 lrwxrwxrwx. 1 root root 16 Jul 22 10:15 /usr/bin/python3-config -> python3.6-config [JohnRambo@Machine ~]$

[JohnRambo@Machine ~]$ pip3.6 install networkit WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip. Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue. To avoid this problem you can invoke Python with '-m pip' instead of running pip directly. WARNING: Value for scheme.platlib does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /usr/local/lib64/python3.6/site-packages sysconfig: /usr/lib64/python3.6/site-packages WARNING: Value for scheme.purelib does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /usr/local/lib/python3.6/site-packages sysconfig: /usr/lib/python3.6/site-packages WARNING: Value for scheme.headers does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /usr/local/include/python3.6m/UNKNOWN sysconfig: /usr/include/python3.6m/UNKNOWN WARNING: Value for scheme.scripts does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /usr/local/bin sysconfig: /usr/bin WARNING: Value for scheme.data does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /usr/local sysconfig: /usr WARNING: Additional context: user = False home = None root = None prefix = None Defaulting to user installation because normal site-packages is not writeable Collecting networkit Using cached networkit-9.0.tar.gz (3.2 MB) Requirement already satisfied: scipy in ./.local/lib/python3.6/site-packages (from networkit) (1.5.4) Requirement already satisfied: numpy in ./.local/lib/python3.6/site-packages (from networkit) (1.19.5) Building wheels for collected packages: networkit Building wheel for networkit (setup.py) ... error ERROR: Command errored out with exit status 1: command: /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/setup.py'"'"'; __file__='"'"'/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2o4x2638 cwd: /tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/ Complete output (73 lines): running bdist_wheel running build running build_py creating build creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/networkit copying networkit/GEXFIO.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/GraphMLIO.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/__init__.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/algebraic.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/coloring.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/csbridge.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/dynamic.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/exceptions.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/nxadapter.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/partitioning.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/plot.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/sampling.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/stopwatch.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/support.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/viztasks.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/workflows.py -> build/lib.linux-x86_64-3.6/networkit creating build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/__init__.py -> build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/csv.py -> build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/pyclient.py -> build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/streaming.py -> build/lib.linux-x86_64-3.6/networkit/gephi creating build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/__init__.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/job.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/multiprocessing_helper.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/plot.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/profiling.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/stat.py -> build/lib.linux-x86_64-3.6/networkit/profiling creating build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/__init__.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_algorithms.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_centrality.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_community.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_generators.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graph.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graph_traversal.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graphio.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graphtools.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_matching_algorithms.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_randomization.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_reachability.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_scd.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_sparsification.py -> build/lib.linux-x86_64-3.6/networkit/test creating build/lib.linux-x86_64-3.6/networkit/test/extension copying networkit/test/extension/__init__.py -> build/lib.linux-x86_64-3.6/networkit/test/extension copying networkit/test/extension/test.py -> build/lib.linux-x86_64-3.6/networkit/test/extension creating build/lib.linux-x86_64-3.6/networkit/test/gephi copying networkit/test/gephi/__init__.py -> build/lib.linux-x86_64-3.6/networkit/test/gephi creating build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/measure.html -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/overlay.html -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/profile.html -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/profiling.css -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/profiling.js -> build/lib.linux-x86_64-3.6/networkit/profiling/html creating build/lib.linux-x86_64-3.6/networkit/profiling/latex copying networkit/profiling/latex/measure.tex -> build/lib.linux-x86_64-3.6/networkit/profiling/latex copying networkit/profiling/latex/profile.tex -> build/lib.linux-x86_64-3.6/networkit/profiling/latex creating build/lib.linux-x86_64-3.6/networkit/profiling/description copying networkit/profiling/description/descriptions.txt -> build/lib.linux-x86_64-3.6/networkit/profiling/description running build_ext initializing NetworKit compilation with: 'cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/build/lib.linux-x86_64-3.6 -DCMAKE_CXX_COMPILER=g++ -DNETWORKIT_FLATINSTALL=ON -DNETWORKIT_PYTHON=/usr/include/python3.6m -DNETWORKIT_PYTHON_SOABI=cpython-36m-x86_64-linux-gnu /tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5' CMake Error at CMakeLists.txt:1 (cmake_minimum_required): CMake 3.6 or higher is required. You are running version 2.8.12.2 -- Configuring incomplete, errors occurred! cmake returned an error, exiting setup.py ---------------------------------------- ERROR: Failed building wheel for networkit Running setup.py clean for networkit Failed to build networkit Installing collected packages: networkit WARNING: Value for scheme.platlib does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /home/JohnRambo/.local/lib/python3.6/site-packages sysconfig: /home/JohnRambo/.local/lib64/python3.6/site-packages WARNING: Value for scheme.headers does not match. Please report this to <https://github.com/pypa/pip/issues/10151> distutils: /home/JohnRambo/.local/include/python3.6m/networkit sysconfig: /home/JohnRambo/.local/include/python3.6/networkit WARNING: Additional context: user = True home = None root = None prefix = None Running setup.py install for networkit ... error ERROR: Command errored out with exit status 1: command: /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/setup.py'"'"'; __file__='"'"'/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-e0vz3nq0/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/JohnRambo/.local/include/python3.6m/networkit cwd: /tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/ Complete output (72 lines): running install running build running build_py creating build/lib.linux-x86_64-3.6 creating build/lib.linux-x86_64-3.6/networkit copying networkit/GEXFIO.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/GraphMLIO.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/__init__.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/algebraic.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/coloring.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/csbridge.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/dynamic.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/exceptions.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/nxadapter.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/partitioning.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/plot.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/sampling.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/stopwatch.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/support.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/viztasks.py -> build/lib.linux-x86_64-3.6/networkit copying networkit/workflows.py -> build/lib.linux-x86_64-3.6/networkit creating build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/__init__.py -> build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/csv.py -> build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/pyclient.py -> build/lib.linux-x86_64-3.6/networkit/gephi copying networkit/gephi/streaming.py -> build/lib.linux-x86_64-3.6/networkit/gephi creating build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/__init__.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/job.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/multiprocessing_helper.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/plot.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/profiling.py -> build/lib.linux-x86_64-3.6/networkit/profiling copying networkit/profiling/stat.py -> build/lib.linux-x86_64-3.6/networkit/profiling creating build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/__init__.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_algorithms.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_centrality.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_community.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_generators.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graph.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graph_traversal.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graphio.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_graphtools.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_matching_algorithms.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_randomization.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_reachability.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_scd.py -> build/lib.linux-x86_64-3.6/networkit/test copying networkit/test/test_sparsification.py -> build/lib.linux-x86_64-3.6/networkit/test creating build/lib.linux-x86_64-3.6/networkit/test/extension copying networkit/test/extension/__init__.py -> build/lib.linux-x86_64-3.6/networkit/test/extension copying networkit/test/extension/test.py -> build/lib.linux-x86_64-3.6/networkit/test/extension creating build/lib.linux-x86_64-3.6/networkit/test/gephi copying networkit/test/gephi/__init__.py -> build/lib.linux-x86_64-3.6/networkit/test/gephi creating build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/measure.html -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/overlay.html -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/profile.html -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/profiling.css -> build/lib.linux-x86_64-3.6/networkit/profiling/html copying networkit/profiling/html/profiling.js -> build/lib.linux-x86_64-3.6/networkit/profiling/html creating build/lib.linux-x86_64-3.6/networkit/profiling/latex copying networkit/profiling/latex/measure.tex -> build/lib.linux-x86_64-3.6/networkit/profiling/latex copying networkit/profiling/latex/profile.tex -> build/lib.linux-x86_64-3.6/networkit/profiling/latex creating build/lib.linux-x86_64-3.6/networkit/profiling/description copying networkit/profiling/description/descriptions.txt -> build/lib.linux-x86_64-3.6/networkit/profiling/description running build_ext initializing NetworKit compilation with: 'cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/build/lib.linux-x86_64-3.6 -DCMAKE_CXX_COMPILER=g++ -DNETWORKIT_FLATINSTALL=ON -DNETWORKIT_PYTHON=/usr/include/python3.6m -DNETWORKIT_PYTHON_SOABI=cpython-36m-x86_64-linux-gnu /tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5' CMake Error at CMakeLists.txt:1 (cmake_minimum_required): CMake 3.6 or higher is required. You are running version 2.8.12.2 -- Configuring incomplete, errors occurred! cmake returned an error, exiting setup.py ---------------------------------------- ERROR: Command errored out with exit status 1: /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/setup.py'"'"'; __file__='"'"'/tmp/pip-install-7pignmes/networkit_25d35f69cd4f447790a6d653f52e7ea5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-e0vz3nq0/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/JohnRambo/.local/include/python3.6m/networkit Check the logs for full command output. [JohnRambo@Machine ~]$

1条回答

网友

1楼 · 发布于 2024-06-02 08:00:15

我使用以下命令（来自here的前三个命令）解决了这个问题：

sudo yum install epel-release cmake3
sudo yum remove cmake
sudo ln -s /usr/bin/cmake3 /usr/bin/cmake
pip3.6 install networkit

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