以下代码导致了此错误:
Traceback (most recent call last):
File "/t.py", line 19, in <module>
seqsInfo[record.id] = SeqInfo(len(record), record.seq[0])
TypeError: list indices must be integers or slices, not str
from Bio import SeqIO
class SeqInfo():
def __init__(self, length, seqStart):
self.length = length
self.seqStart = seqStart
seqsInfo=[]
for record in SeqIO.parse("data/hybrid.AA.fasta", "fasta"):
seqsInfo[record.id] = SeqInfo(len(record), record.seq[0])
这是输入文件:
>STRG2.t1 gene=STRG2 seq_id=NbV1Ch01 type=cds
PYKTCHKKFRNKMPSFYLASFCIMVLSFSITFASGNSVSNKTCIDDATIVLSFGLYQNSC
LEAEAIIYSWVERAVSQDPRMAASLLRLHFHDCFVNGCDASVLLDDTPNFIGEKTAAPNL
NSLRGFEVIDSIKADLELACPQTVSCADILAIAARDSVVLSGGWRWKVQMGRKDSLTAST
KAVNNNIPGPNSNIATLVSSFQNIGLSLQDMVTLSGAHTIGSARCSTFSSRLNGGGNSDM
NLDFLQSLQQLCSVSDTNITLANLDDMTPSTFDNQYYVNLLSGKGLLVSDQVLASGDDNT
REIVQTYVDDPSAFFDDFRNSMLKMGSLAPPTGTTGEIRVNCRV
我错过了什么
由于您试图将一个非整数作为索引分配给列表,因此会出现这样的错误。请将列表更改为dict,因为record.id是“STRG2.t1”。希望这能解决问题:
输出: {'STRG2.t1':<;main.SeqInfo对象位于0x1178b3710>;}
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